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"Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases."
Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Soll D.,
Mol. Cell,
12
287-294
(2003).
"Crystal structure of the tRNA processing enzyme RNase PH from Aquifex aeolicus."
Ishii R, Nureki O, Yokoyama S.,
J. Biol. Chem.,
278
32397-32404
(2003).
"Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic-code expansion"
Kobayashi T, Nureki O, Ishitani R, Yaremchuk A, Tukalo M, Cusack S, Sakamoto K, Yokoyama S.,
Nat. Struct. Biol.,
10
425-432
(2003).
"Structural basis of the replication origin recognition by the DnaA protein"
Fujikawa N, Kurumizaka H, Nureki O, Terada T, Shirouzu M, Katayama T, Yokoyama S.,
Nucleic Acids Res.,
31
2077-2086
(2003).
"Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme"
Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S.,
Cell,
113
383-394
(2003).
"ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding"
Sekine S, Nureki O, Dubois DY, Bernier S, Chenevert R, Lapointe J, Vassylyev DG, Yokoyama S.,
EMBO J.,
22
676-688
(2003).
"Mechanism of molecular interactions for tRNAVal recognition by valyl-tRNA synthetase"
Fukai S, Nureki O, Sekine S, Shimada A, Vassylyev DG, Yokoyama S.,
RNA,
8
100-111
(2003).
"Crystal structure of human epidermal growth factor in complex with the extracellular domains of the receptor"
Ogiso H, Ishitani R, Nureki O, Fukai S, Yamanaka M, Kim JH, Saito K, Sakamoto A, Inoue M, Shirouzu M, Yokoyama S.,
Cell,
110
775-787
(2002).
"Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form."
Kagawa W, Kurumizaka H, Ishitani R, Fukai S, Nureki O, Shibata T, Yokoyama S.,
Mol. Cell,
10
359-371
(2002).
"An enzyme with a deep trefoil knot for the active-site architecture"
Nureki O, Shirouzu M, Hashimoto K, Ishitani R, Terada T, Tamakoshi M, Oshima T, Chijimatsu M, Takio K, Vassylyev DG, Shibata T, Inoue Y, Kuramitsu S, Yokoyama S.,
Acta Crystallogr. D.,
58
1129-1137
(2002).
"Functional convergence of two lysyl-tRNA synthetases with unrelated topologies"
Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Soll D, Yokoyama S.,
Nat. Struct. Biol.,
9
257-262
(2002).
"Crystal structure of archaeosine tRNA-guanine transglycosylase"
Ishitani R, Nureki O, Fukai S, Kijimoto T, Nameki N, Watanabe M, Kondo H, Sekine M, Okada N, Nishimura S, Yokoyama S.,
J. Mol. Biol.,
318
665-677
(2002).
"Mutation Separation of two pathways for editing by a class I tRNA synthetase"
Hendrickson TL, Nomanbhoy TK, de Crecy-Lagard V, Fukai S, Nureki O, Yokoyama S, Schimmel P.,
Mol. Cell,
9
353-362
(2002).
"DNA kink at the contact site with an arginine-rich helix of human centeromere protein B"
Tanaka Y*, Nureki O*, Kurumizaka H*, Fukai S, Kawaguchi S, Ikuta M, Iwahara J, Okazaki T and Yokoyama S (*equal contribution),
EMBO J,
20
6612-6618
(2001).
"Structural basis for amino acid and tRNA recognition by class I aminoacyl-tRNA synthetases."
Nureki O, Fukai S, Sekine S, Shimada A, Terada T, Nakama T, Shirouzu M, Vassylyev DG, Yokoyama S,
Cold Spring Harb Symp Quant Biol.,
66
167-173
(2001).
"Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA."
Tanaka Y, Nureki O, Kurumizaka H, Fukai S, Kawaguchi S, Ikuta M, Iwahara J, Okazaki T, Yokoyama S.,
EMBO J.,
20
6612-6618
(2001).
"Structural basis for the recognition of isoleucyl-adenylate and an antibiotic, mupirocin, by isoleucyl-tRNA synthetase"
Nakama T, Nureki O, Yokoyama S.,
J. Biol. Chem.,
276
47387-47393
(2001).
"Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase"
Shimada A, Nureki O, Goto M, Takahashi S, Yokoyama S.,
Proc. Natl. Acad.Sci. USA,
98
13537-13542
(2001).
"Crystallization and preliminary X-ray analysis of a DNA primase from the hyperthermophilic archaeon, Pyrococcus horikoshii"
Ito N, Nureki O, Shirouzu M, Yokoyama S, Hanaoka F.,
J. Biochem.,
130
727-730
(2001).
"Selenomethionine incorporation into a protein by cell-free synthesis"
Kigawa T, Yamaguchi-Nunokawa E, Kodama K, Matsuda T, Yabuki T, Matsuda N, Ishitani R, Nureki O, Yokoyama S.,
J. Struc. Func. Gen.,
2
87-104
(2001).
"Crystallization and preliminary X-ray analysis of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii"
Ishitani R, Nureki O, Kijimoto T, Watanabe M, Kondo H, Nameki N, Okada N, Nishimura S, Yokoyama S.,
Acta Crystallogr. D.,
57
1659-1662
(2001).
"Crystal structure of human AUH protein, a single-stranded RNA-binding homologue of enoyl-CoA hydratase"
Kurimoto K, Fukai S, Nureki O, Muto Y, Yokoyama S.,
Structure,
9
1253-1263
(2001).
"Crucial role of the HIGH-loop lysine for the catalytic activity of arginyl-tRNA synthetase"
Sekine S, Shimada A, Nureki O, Cavarelli J, Moras D, Vassylyev DG, Yokoyama S.,
J. Biol. Chem.,
276
3723-3726
(2001).
"Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase"
Sekine S, Nureki O, Shimada A, Vassylyev DG, Yokoyama S.,
Nat. Struct. Biol.,
8
203-206
(2001).